Table of Contents

Home

The Simulation

• The interactive simulation
  Run the Java simulation online
  
  
• Batch Simulation Runs
  Run batch simulations to see effect of parameter changes
  
  
• Instructions for Running the Simulation
  
  
• Flowchart Summary
  
  
• Index of Cells and Chemicals
  
  
• Summary of the Simulation Assumptions and Formulation
  
  
• Summary of Updates
  
  

Scientific References and Summaries

• Knowledge Base
  (Detailed references, abstracts, and links to online journals)
  
  
• Literature Summaries
  (Selected reviews and summaries of papers)

Parameters

• Status of Parameters
  A brief summary of meanings and values of parameters in the simulation.
  
  
• Detailed Parameter Estimates
  • Cell Motion
  • Chemotaxis Parameters
  • Cell densities
  • Cytokine Receptor Kinetics
  • Diffusion of Molecules
  • Amyloid Beta and fibrillogenesis
  • Chemical concentrations and conversions
  • Chemical secretion rates and concentrations

Latest results and repeatable experiments

Case Studies and preliminary simulation results